Differential Expression Analysis and Enrichment Analysis
Cristy Medina Armijo
2026-03-12
1 Quality Control Results
1.1 Reads Quality Control
(Aquà puedes insertar figuras de MultiQC/FastQC si tienes imágenes o links.)
1.2 Overall Results - Estado
1.2.1 Tabla general de recuentos por muestra
1.3 PCA
1.4 Biplot visualization
1.5 Heatmap with Pearson Correlation
2 T/C Differential Expression Analysis
2.1 DESeq2 Results
## # A tibble: 1 × 4
## genes_en_tabla DEGs_padj_0.05 sobreexpresados subexpresados
## <int> <int> <int> <int>
## 1 9339 525 289 2362.2 Plot MA
2.3 Volcano plot
2.4 Differentially Expressed Genes heatmap
3 Overall Results - Exposición
The following sections include the analysis of differential expression of genes between experimental groups and the subsequent enrichment analysis.
3.1 PCA
(Reusar PCA de arriba; no se repite para evitar duplicación.)
3.2 Biplot visualization
(Reusar biplot de arriba; no se repite para evitar duplicación.)
3.3 Heatmap with Pearson Correlation
(Reusar correlación de arriba; no se repite para evitar duplicación.)
4 As/Cr Differential Expression Analysis
4.1 DESeq2 Results
## # A tibble: 1 × 4
## genes_en_tabla DEGs_padj_0.05 sobreexpresados subexpresados
## <int> <int> <int> <int>
## 1 9339 3999 2101 18984.2 Plot MA
4.3 Volcano plot
4.4 Differentially Expressed Genes heatmap
5 Co/Cr Differential Expression Analysis
5.1 DESeq2 Results
## # A tibble: 1 × 4
## genes_en_tabla DEGs_padj_0.05 sobreexpresados subexpresados
## <int> <int> <int> <int>
## 1 9339 3633 1605 20285.2 Plot MA
5.3 Volcano plot
5.4 Differentially Expressed Genes heatmap
6 Co/As Differential Expression Analysis
6.1 DESeq2 Results
## # A tibble: 1 × 4
## genes_en_tabla DEGs_padj_0.05 sobreexpresados subexpresados
## <int> <int> <int> <int>
## 1 9339 1063 573 4906.2 Plot MA
6.3 Volcano plot
6.4 Differentially Expressed Genes heatmap
